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Unknown. Sound similarities might suggest a connection to words related to darkness or deepinterior, such as 雲(kumo, “cloud”), 蜘蛛(kumo, “spider”), 隈(kuma, “a recess, a deep interior corner”), 黒(kuro, “black”), 暗(kura, “darkness”); more at 黒. Alternately, these broad similarities might be pure coincidence.
Noun stem of verb 凹む(kubomu, “to become hollow, to become sunken, to become indented”), itself a compound of 凹(kubo, “an indentation, a dip”) + む(mu, “to become like something”, auxiliary verb attaching to nouns or adjective stems, cognate with びる(biru)biru).[3]
The 凹み or 窪み spelling with the okuriganaみ is more common when used as a standalone term. The spelling without the okurigana is more common in compounds.
Derived terms
Terms derived from 凹 (kubomi)
凹石(kubomi ishi), 窪石(kubomi ishi): an artifact from the Jōmon period, consisting of a flat stone with one to several indentations, of uncertain utility but thought to be used to help start fires
Noun stem of verb 凹む(hekomu, “to become hollow, to become sunken, to become indented”), itself an abbreviated compound of 減り(heri, noun stem of verb 減る(heru, “to reduce, to decrease, to diminish”)) + 込む(komu, “to go inwardly”).[3]
Uncertain. Possibly onomatopoeic from the sound of a wheel bouncing in a rut or pothole, or from the sound of something hollow when tapped. Compare adverb ぼこぼこ(bokoboko, “full of holes; hollowly”).
Alternately, may be compound of ぼ(bo, “empty?”, uncertain; possibly related to verb 掘る(horu, “to dig, to dig out”)) + こ(ko, “place”, suffixing element seen in other words such as そこ(soko, “there”) or 端っこ(hashikko, “edge, end, tip”)). Compare 凸(deko, “protrusion”), likely a compound of 出(de, “coming out”) + こ(ko, “place”, suffixing element).